PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00648g00315.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 447aa    MW: 48768 Da    PI: 8.0079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00648g00315.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07123146426
                               ---SGG.GGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrff.artGtCkyGdrCkFaHg 26 
                               +lC+++  + G C+yG++C++ H+
  Peaxi162Scf00648g00315.1 123 KLCHNWvNKDGKCPYGAKCRYLHS 146
                               56777756899************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.7753460IPR000571Zinc finger, CCCH-type
SMARTSM003560.143659IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943119148IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4121147IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-5123146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6123145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.5E-17146282IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.1E-6152191IPR001680WD40 repeat
SuperFamilySSF509783.85E-44154441IPR017986WD40-repeat-containing domain
PfamPF004009.6E-6154191IPR001680WD40 repeat
PROSITE profilePS5008214.352159200IPR001680WD40 repeat
PROSITE profilePS5029418.326159407IPR017986WD40-repeat-containing domain
PROSITE patternPS006780178192IPR019775WD40 repeat, conserved site
PRINTSPR003202.1E-6178192IPR020472G-protein beta WD-40 repeat
SMARTSM00320150231267IPR001680WD40 repeat
SMARTSM003200.0059274311IPR001680WD40 repeat
PfamPF004000.0084280311IPR001680WD40 repeat
PROSITE profilePS5008212.313281320IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.7E-28283439IPR015943WD40/YVTN repeat-like-containing domain
PRINTSPR003202.1E-6298312IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0028314351IPR001680WD40 repeat
PfamPF004000.0068316350IPR001680WD40 repeat
PRINTSPR003202.1E-6338352IPR020472G-protein beta WD-40 repeat
SMARTSM003204355398IPR001680WD40 repeat
SMARTSM0032016401438IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDIDGSKRVF QRLGPSSSSS QQKSTGPPGP HHQNNAPKVC FHWRNGRCNR YPCPFLHHEL  60
SAPPQNNGIS GSSKRPYGFN DDSNSRGGMR RNTNFNNTWG RNSNGSSSAG GAGGGVVVKK  120
TEKLCHNWVN KDGKCPYGAK CRYLHSWTTG DCFNLLTQLD GHEMVVTGIT LPPGSDKLYS  180
GSKDKTIRLW DCQSGQCAGV VNLDGEVGCI LSEGPWIFVG LTNLVKAWNA QTGTDLSLNG  240
PAGQVYALVI GNDMLLAGTE DGILAWKYNV STNCFEPAAA LKGHTHHVVS LVVGGNRLYS  300
GSMDNSIRVW SLETMQCLQV LTDHTHVVMS VLCWDQFLLS CSLDQTIKVW VANESGNLEV  360
TYTHKEENGL LALCGMHDSE AKPVLLCSCN DNTVRVFDLP SFSERGKLFS KKAVRRIEIG  420
PGGLFFTGDE LGQVRVWQWL TKPSSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B6e-1711843774391F-box/WD repeat protein 7
2ovq_B6e-1711843774391F-box/WD repeat protein 7
2ovr_B6e-1711843774391F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626305.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLK4BFA80.0K4BFA8_SOLLC; Uncharacterized protein
STRINGSolyc03g026350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1